Helper metafunction to select the alignment result type based on the configuration.
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using | configured_alignment_type = typename lazy_conditional_t< traits_type::compute_sequence_alignment, lazy< make_pairwise_alignment_type, first_range_t &, second_range_t & >, std::type_identity< disabled_type > >::type |
| The configured alignment type if selected.
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using | configured_begin_position_type = std::conditional_t< traits_type::compute_begin_positions, alignment_coordinate, disabled_type > |
| The configured begin position type if selected.
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using | configured_debug_score_matrix_type = std::conditional_t< traits_type::is_debug, debug_score_matrix_type, disabled_type > |
| The debug score matrix type if selected.
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using | configured_debug_trace_matrix_type = std::conditional_t< traits_type::is_debug &&traits_type::compute_sequence_alignment, debug_trace_matrix_type, disabled_type > |
| The debug trace matrix type if selected.
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using | configured_end_position_type = std::conditional_t< traits_type::compute_end_positions, alignment_coordinate, disabled_type > |
| The configured end position type if selected.
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using | configured_score_type = std::conditional_t< traits_type::compute_score, score_type, disabled_type > |
| The configured score type if selected.
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using | configured_sequence1_id_type = std::conditional_t< traits_type::output_sequence1_id, uint32_t, disabled_type > |
| The configured sequence id type for the first sequence if selected.
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using | configured_sequence2_id_type = std::conditional_t< traits_type::output_sequence2_id, uint32_t, disabled_type > |
| The configured sequence id type for the second sequence if selected.
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using | debug_score_matrix_type = two_dimensional_matrix< std::optional< score_type >, std::allocator< std::optional< score_type > >, matrix_major_order::column > |
| Score matrix type in debug mode.
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using | debug_trace_matrix_type = two_dimensional_matrix< std::optional< trace_directions >, std::allocator< std::optional< trace_directions > >, matrix_major_order::column > |
| Trace matrix type in debug mode.
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using | disabled_type = std::nullopt_t * |
| The type to indicate that an output option was not configured.
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using | score_type = typename alignment_configuration_traits< std::remove_reference_t< configuration_t > >::original_score_type |
| The user configured score type.
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using | traits_type = alignment_configuration_traits< configuration_t > |
| The traits type used for the alignment.
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template<std::ranges::forward_range first_range_t, std::ranges::forward_range second_range_t, typename configuration_t>
struct seqan3::detail::align_result_selector< first_range_t, second_range_t, configuration_t >
Helper metafunction to select the alignment result type based on the configuration.
- Template Parameters
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first_range_t | The type of the first sequence. |
second_range_t | The type of the second sequence. |
configuration_t | The configuration type. Must be of type seqan3::detail::configuration |